Pegasus for Single Cell Analysis¶
Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.
Release Highlights in Current Stable¶
1.8.1 August 23, 2023¶
Bug fix in cell marker JSON files for
infer_cell_types
function.
1.8.0 July 21, 2023¶
New Feature and Improvement
Updata
human_immune
andhuman_lung
marker sets.Add
mouse_liver
marker set.Add split_one_cluster function to subcluster one cluster into a specified number of subclusters.
Update neighbors function to set
use_cache=False
by default, and adjust K tomin(K, int(sqrt(n_samples)))
. [PR 272]In infer_doublets function, argument
manual_correction
now accepts a float number threshold specified by users for cut-off. [PR 275]
Bug Fix
Fix divide by zero issue in
integrative_nmf
function. [PR 258]Compatibility with Pandas v2.0. [PR 261]
Allow
infer_doublets
to use any count matrix with key name specified by users. [PR 268 Thanks to Donghoon Lee]